PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G031100.1
Common NameB456_012G031100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 228aa    MW: 24936.3 Da    PI: 9.533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G031100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10174220555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  Gorai.012G031100.1 174 HSLAERVRREKISERMKYLQDLVPGC----NKITGKASMLDEIINYVQSLQ 220
                         999***********************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10167224No hitNo description
PROSITE profilePS5088815.904169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16170225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-8174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGGASGDSVL PDMVMARQVK PDPGLESPWP ELGKVDMAAM GFGPCGYGNG PSFDMNHAIS  60
RTSSYPPAVV ATKAVEVKGN YEKMASAVGK ESFNKRKAEK LQNSNVVAEE SKRIKACEDE  120
GEESKITGPN TNKSSNNKKE ASGDASKENS KVFEVQKPDF IHVWARRGQA TDRHSLAERV  180
RREKISERMK YLQDLVPGCN KITGKASMLD EIINYVQSLQ RKVEVKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5322581e-143EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
GenBankEU5323021e-143EU532302.1 Gossypium barbadense clone I11-4 ISSR marker genomic sequence.
GenBankEU5323091e-143EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence.
GenBankEU5323131e-143EU532313.1 Gossypium barbadense clone I11-15 ISSR marker genomic sequence.
GenBankEU5323161e-143EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464358.11e-144PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW31e-46HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A0D2VUR71e-169A0A0D2VUR7_G
STRINGVIT_03s0038g04760.t015e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59472543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.15e-48bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]